Bioconductor Ribosome profiling

Showing : ribosome profiling • reset

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990

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deseq2 differential translation ribosome profiling

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by katerinadouka91 • 0

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1.5k

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aligning ribosome profiling RNA-Seq

5.2 years ago Crispy • 0

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1.5k

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deseq2 ribosome profiling wald lrt

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by indrik.wijaya ▴ 20

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2.4k

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deseq2 sequencing ribosome profiling riboseq multiple factor design

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by kotcha.m ▴ 10

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3.2k

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deseq2 ribosome profiling

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by xiaozhuo ▴ 10

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1.3k

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R riboseqr ribosome profiling

6.8 years ago bsad • 0

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841

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riboprofiling ribosome profiling

7.2 years ago nicholsonangela7 • 0

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2.1k

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biomart bioconductor grangeslist cds ribosome profiling

updated 7.5 years ago by Hervé Pagès 16k • written 7.5 years ago by Walter F. Baumann ▴ 10

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2.4k

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deseq2 translation efficiency spikes ribosome profiling

8.1 years ago GFM ▴ 20

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1.8k

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riboseqr ribosome profiling

updated 8.7 years ago by Thomas J Hardcastle ▴ 180 • written 8.8 years ago by alper.celik • 0

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1.7k

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R riboseqr ribosome profiling

9.1 years ago ohtack9 • 0

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2.4k

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deseq2 linear model ribosome profiling stats

updated 9.3 years ago by Ryan C. Thompson ★ 7.9k • written 9.3 years ago by Jake ▴ 90

12 results • Page 1 of 1

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

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Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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